PoplarV1, Main, Exploration, bibRecord, 000929

Genome-wide transcriptional adaptation to salt stress in Populus.

Identifieur interne : 000929 ( Main/Exploration ); précédent : 000928; suivant : 000930

Genome-wide transcriptional adaptation to salt stress in Populus.

Auteurs : Jin-Gui Liu [République populaire de Chine] ; Xiao Han [République populaire de Chine] ; Tong Yang [République populaire de Chine] ; Wen-Hui Cui [République populaire de Chine] ; Ai-Min Wu [République populaire de Chine] ; Chun-Xiang Fu [République populaire de Chine] ; Bai-Chen Wang [République populaire de Chine] ; Li-Jun Liu [République populaire de Chine]

Source :

BMC plant biology [ 1471-2229 ] ; 2019.

RBID : pubmed:31429697

Descripteurs français

English descriptors

KwdEn :
- Adaptation, Physiological (genetics), Gene Expression Regulation, Plant (MeSH), Gene Ontology (MeSH), Gene Regulatory Networks (MeSH), Genome, Plant (MeSH), Phenotype (MeSH), Populus (genetics), Populus (physiology), RNA, Plant (MeSH), Salt Stress (genetics), Sequence Analysis, RNA (MeSH), Transcription, Genetic (MeSH), Transcriptome (MeSH), Trees (genetics), Trees (physiology).
MESH :
- chemical : RNA, Plant.
- genetics : Adaptation, Physiological, Populus, Salt Stress, Trees.
- physiology : Populus, Trees.
- Gene Expression Regulation, Plant, Gene Ontology, Gene Regulatory Networks, Genome, Plant, Phenotype, Sequence Analysis, RNA, Transcription, Genetic, Transcriptome.

Abstract

BACKGROUND

Adaptation to abiotic stresses is crucial for the survival of perennial plants in a natural environment. However, very little is known about the underlying mechanisms. Here, we adopted a liquid culture system to investigate plant adaptation to repeated salt stress in Populus trees.

RESULTS

We first evaluated phenotypic responses and found that plants exhibit better stress tolerance after pre-treatment of salt stress. Time-course RNA sequencing (RNA-seq) was then performed to profile changes in gene expression over 12 h of salt treatments. Analysis of differentially expressed genes (DEGs) indicated that significant transcriptional reprogramming and adaptation to repeated salt treatment occurred. Clustering analysis identified two modules of co-expressed genes that were potentially critical for repeated salt stress adaptation, and one key module for salt stress response in general. Gene Ontology (GO) enrichment analysis identified pathways including hormone signaling, cell wall biosynthesis and modification, negative regulation of growth, and epigenetic regulation to be highly enriched in these gene modules.

CONCLUSIONS

This study illustrates phenotypic and transcriptional adaptation of Populus trees to salt stress, revealing novel gene modules which are potentially critical for responding and adapting to salt stress.

DOI: 10.1186/s12870-019-1952-2
PubMed: 31429697
PubMed Central: PMC6701017

Affiliations:

République populaire de Chine

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Gene Ontology (MeSH)</term>
<term>Gene Regulatory Networks (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Phenotype (MeSH)</term>
<term>Populus (genetics)</term>
<term>Populus (physiology)</term>
<term>RNA, Plant (MeSH)</term>
<term>Salt Stress (genetics)</term>
<term>Sequence Analysis, RNA (MeSH)</term>
<term>Transcription, Genetic (MeSH)</term>
<term>Transcriptome (MeSH)</term>
<term>Trees (genetics)</term>
<term>Trees (physiology)</term>
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<term>Adaptation physiologique (génétique)</term>
<term>Analyse de séquence d'ARN (MeSH)</term>
<term>Arbres (génétique)</term>
<term>Arbres (physiologie)</term>
<term>Gene Ontology (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Phénotype (MeSH)</term>
<term>Populus (génétique)</term>
<term>Populus (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Réseaux de régulation génique (MeSH)</term>
<term>Stress salin (génétique)</term>
<term>Transcription génétique (MeSH)</term>
<term>Transcriptome (MeSH)</term>
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<term>Populus</term>
<term>Salt Stress</term>
<term>Trees</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Adaptation physiologique</term>
<term>Arbres</term>
<term>Populus</term>
<term>Stress salin</term>
</keywords>
<keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Arbres</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Populus</term>
<term>Trees</term>
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<term>Gene Regulatory Networks</term>
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<term>Sequence Analysis, RNA</term>
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<term>Phénotype</term>
<term>Régulation de l'expression des gènes végétaux</term>
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<front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b>
</p>
<p>Adaptation to abiotic stresses is crucial for the survival of perennial plants in a natural environment. However, very little is known about the underlying mechanisms. Here, we adopted a liquid culture system to investigate plant adaptation to repeated salt stress in Populus trees.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>RESULTS</b>
</p>
<p>We first evaluated phenotypic responses and found that plants exhibit better stress tolerance after pre-treatment of salt stress. Time-course RNA sequencing (RNA-seq) was then performed to profile changes in gene expression over 12 h of salt treatments. Analysis of differentially expressed genes (DEGs) indicated that significant transcriptional reprogramming and adaptation to repeated salt treatment occurred. Clustering analysis identified two modules of co-expressed genes that were potentially critical for repeated salt stress adaptation, and one key module for salt stress response in general. Gene Ontology (GO) enrichment analysis identified pathways including hormone signaling, cell wall biosynthesis and modification, negative regulation of growth, and epigenetic regulation to be highly enriched in these gene modules.</p>
</div>
<div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b>
</p>
<p>This study illustrates phenotypic and transcriptional adaptation of Populus trees to salt stress, revealing novel gene modules which are potentially critical for responding and adapting to salt stress.</p>
</div>
</front>
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<Month>02</Month>
<Day>25</Day>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Adaptation to abiotic stresses is crucial for the survival of perennial plants in a natural environment. However, very little is known about the underlying mechanisms. Here, we adopted a liquid culture system to investigate plant adaptation to repeated salt stress in Populus trees.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">We first evaluated phenotypic responses and found that plants exhibit better stress tolerance after pre-treatment of salt stress. Time-course RNA sequencing (RNA-seq) was then performed to profile changes in gene expression over 12 h of salt treatments. Analysis of differentially expressed genes (DEGs) indicated that significant transcriptional reprogramming and adaptation to repeated salt treatment occurred. Clustering analysis identified two modules of co-expressed genes that were potentially critical for repeated salt stress adaptation, and one key module for salt stress response in general. Gene Ontology (GO) enrichment analysis identified pathways including hormone signaling, cell wall biosynthesis and modification, negative regulation of growth, and epigenetic regulation to be highly enriched in these gene modules.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">This study illustrates phenotypic and transcriptional adaptation of Populus trees to salt stress, revealing novel gene modules which are potentially critical for responding and adapting to salt stress.</AbstractText>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Han</LastName>
<ForeName>Xiao</ForeName>
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<AffiliationInfo><Affiliation>Guangdong Key Laboratory for Innovative Development and Utilization of Forest Plant Germplasm, College of Forestry and Landscape Architecture, South China Agricultural University, Guangzhou, 510642, China.</Affiliation>
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<AffiliationInfo><Affiliation>Key Laboratory of Biofuels, Qingdao Engineering Research Center of Biomass Resources and Environment, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101, Shandong, China.</Affiliation>
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<ForeName>Bai-Chen</ForeName>
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<AffiliationInfo><Affiliation>Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.</Affiliation>
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<Month>08</Month>
<Day>20</Day>
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Genome-wide transcriptional adaptation to salt stress in Populus.

Genome-wide transcriptional adaptation to salt stress in Populus.

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